Although I can confirm the issue with surface files. Please wait a day updating freeview. I will resolve the issue and email you and the list once it is resolved. Hopefully within the day.
-Zeke On 06/25/2015 02:20 PM, Z K wrote: > Hmmmm. Im not really sure how to proceed because you should not have > that file. What does your build-stamp.txt file contain? Twice I have > tested by downloading the lion OSX version of freesurfer from this page: > > https://surfer.nmr.mgh.harvard.edu/fswiki/Download > > and never was a file called "freeview.bin" part of the installation. > Perhaps you could consider completely removing the current installation > and re-install? making absolutely sure you are using > freesurfer-Darwin-lion-stable-pub-v5.3.0.dmg > > Once that is complete you can update to the newst freeview. Download the > following link > (ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/freeview/lion/Freeview.zip), > Double click it, and replace you $FREESURFER_HOME/Freeview file with the > one in the zip file. > > -Zeke > > On 06/25/2015 01:39 PM, joseph veliz wrote: >> Sorry that is an archive zip that i also downloaded >> >> The one installed is Freesurfer -Darwin -lion -stabel -pub-v5.3.0.dmg >> >> >> >> On Thu, Jun 25, 2015 at 10:36 AM, joseph veliz <[email protected] >> <mailto:[email protected]>> wrote: >> >> Positive we downloaded Freesurfer -Darwin - lion -dev.tar.gz >> >> On Thu, Jun 25, 2015 at 9:04 AM, Z K <[email protected] >> <mailto:[email protected]>> wrote: >> >> >> >> On 06/23/2015 04:52 PM, joseph veliz wrote: >> > Hello, >> > >> > >> > We are having issues installing Freeview on Macbook pro (2015) >> > >> > 2.2 GHz, 16GB DDR3, OSX 10.9.4, Integrated 1.5 GB intel iris pro >> graphic >> > processing. >> > >> > Installing lastest Freesurfer and Freeview downloads of Darwin >> lion v5.3.0. >> > >> > After installing Freesurfer , license and environment setup, the >> only >> > freeview found is in the bin folder and is named freeview.bin >> >> This doenst make sense because the OSX distribution of >> freesurfer does >> not contain a "freeview.bin" file. Only the linux distribution >> contains >> that file. Are you sure you didn't download and install the >> linux build >> on your OSX machine? >> >> >> -Zeke >> >> >> > >> > Commands to open freeview did not work. >> > >> > Then I placed the seperately downloaded Freeview.app in the >> > /application/freesurfer directory, then the command freeview >> responded. >> > >> > We don't know if we are putting the Freeview.app in the >> correct directory? >> > >> > When opening freeview; >> > >> > Volumes are loading fine, but when a Surface is loaded the >> program >> > quits, giving error message. >> > >> > I am thinking the integrated graphics could be the issue >> (uses computers >> > RAM). Reading the freesurfer Requirments wiki, >> > Graphics card: 3D graphics card with its own graphics memory & >> > accelerated OpenGL drivers. Could this be the issue even >> though the >> > macbook has 16GB DDR3 to spare? >> > >> > Also I don't think I am placing the Freeview.app in the >> correct directory? >> > >> > Both gui and script attempts fail loading Surfaces and return >> error >> > >> > 2015-06-23 12:43:29.660 Freeview[1855:303] modalSession has >> been exited >> > prematurely - check for a reentrant call to endModalSession: >> > dyld: lazy symbol binding failed: Symbol not found: >> ___emutls_get_address >> > Referenced from: >> > >> >> /Applications/freesurfer/Freeview.app/Contents/MacOS/../Frameworks/libgomp.1.dylib >> > Expected in: /usr/lib/libSystem.B.dylib >> > >> > dyld: Symbol not found: ___emutls_get_address >> > Referenced from: >> > >> >> /Applications/freesurfer/Freeview.app/Contents/MacOS/../Frameworks/libgomp.1.dylib >> > Expected in: /usr/lib/libSystem.B.dylib >> > >> > [0]PETSC ERROR: >> > >> >> ------------------------------------------------------------------------ >> > [0]PETSC ERROR: Caught signal number 5 TRAP >> > [0]PETSC ERROR: Try option -start_in_debugger or >> -on_error_attach_debugger >> > [0]PETSC ERROR: or see >> > >> >> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC >> > ERROR: or try http://valgrind.org on linux or man libgmalloc >> on Apple to >> > find memory corruption errors >> > [0]PETSC ERROR: configure using --with-debugging=yes, >> recompile, link, >> > and run >> > [0]PETSC ERROR: to get more information on the crash. >> > [0]PETSC ERROR: --------------------- Error Message >> > ------------------------------------ >> > [0]PETSC ERROR: Signal received! >> > [0]PETSC ERROR: >> > >> >> ------------------------------------------------------------------------ >> > [0]PETSC ERROR: Petsc Release Version 2.3.3, Patch 13, Thu May 15 >> > 17:29:26 CDT 2008 HG revision: >> 4466c6289a0922df26e20626fd4a0b4dd03c8124 >> > [0]PETSC ERROR: See docs/changes/index.html for recent updates. >> > [0]PETSC ERROR: See docs/faq.html for hints about trouble >> shooting. >> > [0]PETSC ERROR: See docs/index.html for manual pages. >> > [0]PETSC ERROR: >> > >> >> ------------------------------------------------------------------------ >> > [0]PETSC ERROR: Unknown Name on a darwin12. named >> > fmris-MacBook-Pro.local by Dopamine Tue Jun 23 12:40:59 2015 >> > [0]PETSC ERROR: Libraries linked from >> > >> >> /usr/pubsw/packages/petsc/2.3.3-p13-64b/src/petsc-2.3.3-p13/lib/darwin12.2.0-c-opt >> > [0]PETSC ERROR: Configure run at Mon Dec 17 15:29:35 2012 >> > [0]PETSC ERROR: Configure options --with-debugging=no >> --with-cc=gcc >> > --with-fc=0 --download-f-blas-lapack=0 --download-mpich=1 >> --with-mpi=1 >> > --with-x=0 --with-gnu-copyright-code=0 --with-shared=0 >> COPTFLAGS=-O3 >> > CXXOPTFLAGS=-O3 FOPTFLAGS=-O3 >> > [0]PETSC ERROR: >> > >> >> ------------------------------------------------------------------------ >> > [0]PETSC ERROR: User provided function() line 0 in unknown >> directory >> > unknown file >> > [unset]: aborting job: >> > application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 >> > >> > >> > >> > Any help or comments are much appreciated >> > >> > Thank you so much, >> > >> > Jospeh Veliz >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > [email protected] >> <mailto:[email protected]> >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> <mailto:[email protected]> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person >> to whom it is >> addressed. If you believe this e-mail was sent to you in error >> and the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent >> to you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
