Hi Angela, I think this is a problem I fixed in the development version a couple of days ago. Can you please just try saving the attached 3 files in the directory $FREESURFER_HOME/bin/ replacing the ones that are there? Cheers, Eugenio
Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer ----- Original Message ----- From: "angela favaro" <angela.fav...@unipd.it> To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> Sent: Wednesday, July 1, 2015 5:42:07 AM Subject: Re: [Freesurfer] FS Developer v6 Hippocampal Segmentation Hi all, I have tried to run the new hippocampal segmentation module (after running the dev version of FS 6. The module did not work and this message error appears (please find attached the log). DYLD_LIBRARY_PATH is /Users/angelafavaro/Desktop/prova/freesurfer/lib/gcc/lib:.:/Users/angelafavaro/Desktop/prova/freesurfer/MCRv80/runtime/maci64:/Users/angelafavaro/Desktop/prova/freesurfer/MCRv80/bin/maci64:/Users/angelafavaro/Desktop/prova/freesurfer/MCRv80/sys/os/maci64 Warning: application is running on a locale different from the original platform locale. is it due to something wrong in my path specification? how can I solve this? thank you! Angela > Hi Noah, > I cannot provide you with an unbiased opinion of the new subfield module, > but something you can do is to download the development version and run > the subfield code on data processed with FS 5.3 (assuming you have some), > in order to get an idea of what the segmentations look like. > Cheers, > Eugenio > > Juan Eugenio Iglesias > Postdoctoral researcher BCBL > www.jeiglesias.com > www.bcbl.eu > > Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer > > > ----- Original Message ----- > From: "Noah Markowitz" <noahb.markow...@gmail.com> > To: freesurfer@nmr.mgh.harvard.edu > Sent: Thursday, June 25, 2015 5:03:28 AM > Subject: [Freesurfer] FS Developer v6 Hippocampal Segmentation > > Hello, > > We’re going to be rerunning FS Recon-all using the newest version of FS v6 > developer’s edition. Before any data is pre-processed, we wanted to > receive input from other users on their own experience using it, > specifically the Hippocampal subfield segmentation protocol. Are people > receiving any unusual errors? Is there a lower resolution or less accurate > segmentation of other cortical or subcortical structures? Any input would > be great. > > Cheers, > > Noah Markowitz > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
run_segmentSubjectT1_autoEstimateAlveusML.sh
Description: application/shellscript
run_segmentSubjectT1T2_autoEstimateAlveusML.sh
Description: application/shellscript
run_segmentSubjectT2_autoEstimateAlveusML.sh
Description: application/shellscript
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