Hello Pablo,
Not all of the outputs end in .mgz.
If you look at the recon-all dev table it will show you all of the steps
recon-all takes and what the input/output are:
https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
Your output looks fine to me, but you can always check it against the table.
Remember that this is the table for the developmental version, so it
might not be identical to what your version of FS does. But you can
always run recon-all with the -dontrun flag to get a list of all the
commands.
-Ani
On 08/12/2015 07:30 AM, pablo najt wrote:
Dear FS experts
I recently came across the issue that my outputs from recon-all do not
show .mgh extension. My original data was in analyse. I am aware of
the potential problems but we unfortunately did not have nii or dicom
available. Could this be the problem?
I am attaching a screenshot with the output in the surf folder and a
copy of the recon-all for one of the subjects.
I would greatly appreciate your help on this.
Pablo
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