I think the problem is probably that you created the label from a volume
whereas funcroi expects the label to come from a surface. Instead of
using mri_cor2label and -label for funcroi-config, try using something like
funcroi-config -annot aparc.a2009s G_and_S_cingul-Ant -analysis
analysis_induc_block.lh-roi roiconfig_ACC_lh
On 10/23/15 1:46 PM, Morenikeji Adebayo wrote:
Hi there,
I ran the following analysis commands:
1. mri_cor2label --c
/autofs/cluster/iaslab/NMASA/mri/recon/$s/mri/aparc.a2009s+aseg.mgz --id
11106 --l
/autofs/cluster/iaslab/NMASA/mri/recon/$s/label/labl_ACC_lh.label
2. funcroi-config -labellabl_ACC_lh.label -analysis
analysis_induc_block.lh-roi roiconfig_ACC_lh
3. funcroi-table-sess -analysis analysis_induc_block.lh -contrast
contrast_neg_V_neut -roi roiconfig_ACC_lh-sf
sublist_All_SHORT_n111 -o sumtable_ACC_lh.dat
After running the 'funcroi-table-sess’ command I got the following error:
ERROR: There is a vertex in the label that cannot be matched to
the surface. This usually occurs when the label and surface are
from different subjects or hemispheres of the surface has been
changed since the label was created.
It seems that the problem might be that the command is using my
participant (in this case, nmasa_001) as the source subject BUT it’s
using fsaverage as the target subject. I want the target subject to be
my participant as well (not fsaverage).
Is there a way that I can specify the target subjects? Or is there a
more efficient way do what I’m trying to do (ie: 1. generate labels
for each participant based on their aparc+aseg file and 2. calculate
the mean contrast signal from each ROI for each participant).
Thanks,
Keji
--- Morenikeji Adebayo Clinical Research Coordinator Department of
Psychiatric Neuroscience
Massachusetts General Hospital (p)
617.643.6347k...@nmr.mgh.harvard.edu <mailto:k...@nmr.mgh.harvard.edu>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
