Hi Doug, I get the following error when I use 'foldind' in this command >> aparcstats2table --hemi lh --subjectsfile $SUBJECTS_DIR/RPDR/214_PrePostFort_FSGDorder --parc rostralmiddlefrontal.label --meas foldind --tablefile $SUBJECTS_DIR/Tables/LH_rostralmiddlefrontal_FoldInd.txt
aparcstats2table: error: option --measure: invalid choice: 'foldind' (choose from 'area', 'volume', 'thickness', 'thicknessstd', 'meancurv') Isn't it an option for aparcstats2table yet? Should I make a matlab or python script to extract it? Thanks! Hamdi ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas Greve [gr...@nmr.mgh.harvard.edu] Sent: Friday, November 13, 2015 6:27 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] aparcstats2table -- extracting multiple measures Use foldind On 11/12/15 12:06 PM, Eryilmaz, H. Hamdi wrote: > Thanks Doug for the quick reply! Is there an option in aparcstats2table that > allows to make a table with the folding index measure? If so, what variable > should I use in the flag -meas? > > Best, > Hamdi > > > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Thursday, November 12, 2015 11:26 AM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] aparcstats2table -- extracting multiple measures > > you have to run it separately > > On 11/12/2015 11:18 AM, Eryilmaz, H. Hamdi wrote: >> Dear experts, >> >> I am using aparcstats2table to extract values on a number of measures >> like thickness, curvature, folding index, and surface area for >> specific ROIs. Is it possible to create a table (using >> aparcstats2table) with all these measures included or do I have to >> run it separately and create a separate table for each measure? >> Passing --meas flag multiple items did not work. >> >> Thanks for your help! >> Hamdi >> >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
