what version of FS are you using? When I run aparcstats2table --hemi lh -s subject --meas foldind --tablefile table.dat
it runs fine On 11/16/2015 10:24 AM, Eryilmaz, H. Hamdi wrote: > Hi Doug, > > I get the following error when I use 'foldind' in this command >> > aparcstats2table --hemi lh --subjectsfile > $SUBJECTS_DIR/RPDR/214_PrePostFort_FSGDorder --parc > rostralmiddlefrontal.label --meas foldind --tablefile > $SUBJECTS_DIR/Tables/LH_rostralmiddlefrontal_FoldInd.txt > > aparcstats2table: error: option --measure: invalid choice: 'foldind' (choose > from 'area', 'volume', 'thickness', 'thicknessstd', 'meancurv') > > Isn't it an option for aparcstats2table yet? Should I make a matlab or python > script to extract it? > > Thanks! > Hamdi > > > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Friday, November 13, 2015 6:27 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] aparcstats2table -- extracting multiple measures > > Use foldind > > > On 11/12/15 12:06 PM, Eryilmaz, H. Hamdi wrote: >> Thanks Doug for the quick reply! Is there an option in aparcstats2table that >> allows to make a table with the folding index measure? If so, what variable >> should I use in the flag -meas? >> >> Best, >> Hamdi >> >> >> ________________________________________ >> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve >> [gr...@nmr.mgh.harvard.edu] >> Sent: Thursday, November 12, 2015 11:26 AM >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] aparcstats2table -- extracting multiple measures >> >> you have to run it separately >> >> On 11/12/2015 11:18 AM, Eryilmaz, H. Hamdi wrote: >>> Dear experts, >>> >>> I am using aparcstats2table to extract values on a number of measures >>> like thickness, curvature, folding index, and surface area for >>> specific ROIs. Is it possible to create a table (using >>> aparcstats2table) with all these measures included or do I have to >>> run it separately and create a separate table for each measure? >>> Passing --meas flag multiple items did not work. >>> >>> Thanks for your help! >>> Hamdi >>> >>> >>> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
