Yes I don't think that is it because it processes some of the files. Not sure though.
I did try the mri_convert command but I'd have to run it hundreds or times unless there is some way to make it loop through all the files in the different folders. On Saturday, December 5, 2015, Douglas Greve <gr...@nmr.mgh.harvard.edu> wrote: > Did you see the question "has this file been anonymized?" ? > > On 12/5/15 10:04 AM, Marc Callison wrote: > > Good day, > > I'm getting the following error when I try to convert my DICOM files. > Some of the files do not have the issue, but others do. The error is below. > > WARNING: file > /Users/marc/Desktop/brainscan/DICOM/PA000000/ST000000/SE000001/IM000000 > does not contain a Siemens ASCII header > > has this file been anonymized? > > ERROR: cannot unpack mosiacs without ASCII header > > Darwin Marcs-MacBook-Air.local 15.0.0 Darwin Kernel Version 15.0.0: Sat > Sep 19 15:53:46 PDT 2015; root:xnu-3247.10.11~1/RELEASE_X86_64 x86_64 > > > recon-all -s my_brain exited with ERRORS at Fri Dec 4 20:02:27 CST 2015 > > > For more details, see the log file > /Applications/freesurfer/subjects/my_brain/scripts/recon-all.log > > To report a problem, see > http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > > > I need help figuring out how to solve this if anyone can. I'd really > appreciate it. > > > Thanks, > > Marc > > > _______________________________________________ > Freesurfer mailing listfreesur...@nmr.mgh.harvard.edu > <javascript:_e(%7B%7D,'cvml','Freesurfer@nmr.mgh.harvard.edu');>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >
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