can you send me /Users/marc/Desktop/brainscan/DICOM/PA000000/ST000000/SE000001/IM000000 ? Also, what version of FS are you using?
On 12/05/2015 01:39 PM, Marc Callison wrote: > Yes I don't think that is it because it processes some of the files. > Not sure though. > > I did try the mri_convert command but I'd have to run it hundreds or > times unless there is some way to make it loop through all the files > in the different folders. > > > > On Saturday, December 5, 2015, Douglas Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > Did you see the question "has this file been anonymized?" ? > > On 12/5/15 10:04 AM, Marc Callison wrote: >> Good day, >> >> I'm getting the following error when I try to convert my DICOM >> files. Some of the files do not have the issue, but others do. >> The error is below. >> >> WARNING: file >> /Users/marc/Desktop/brainscan/DICOM/PA000000/ST000000/SE000001/IM000000 >> does not contain a Siemens ASCII header >> >> has this file been anonymized? >> >> ERROR: cannot unpack mosiacs without ASCII header >> >> Darwin Marcs-MacBook-Air.local 15.0.0 Darwin Kernel Version >> 15.0.0: Sat Sep 19 15:53:46 PDT 2015; >> root:xnu-3247.10.11~1/RELEASE_X86_64 x86_64 >> >> >> recon-all -s my_brain exited with ERRORS at Fri Dec 4 20:02:27 >> CST 2015 >> >> >> For more details, see the log file >> /Applications/freesurfer/subjects/my_brain/scripts/recon-all.log >> >> To report a problem, see >> http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> >> >> >> I need help figuring out how to solve this if anyone can. I'd >> really appreciate it. >> >> >> Thanks, >> >> Marc >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> <javascript:_e(%7B%7D,'cvml','Freesurfer@nmr.mgh.harvard.edu');> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
