I would recon the mni152 (or whatever space the AAL atlas is in), map the AAL ROIs onto the surface (vol2surf), then use mri_surf2surf to transfer them to the individual.
On 02/29/2016 06:37 PM, pfot...@nmr.mgh.harvard.edu wrote: > Hi FS community, > > I have recon-ed a set of subjects and I was interested in also obtaining > structural info (cortical thickness, gray matter volume, surface area > etc.) based on a different atlas than the ones FS is using, and in > particular the AAL atlas. > > I was wondering whether my approach would be the correct one or whether > there is another (better and more accurate) approach: > > 1) Convert the AAL atlas into a surface (with mri_vol2surf) from the MNI > space into the native subjects' space, > 2) Use mris_anatomical_stats to calculate the structural stats > > Sorry for the potentially trivial question, and thank you for your time! > > Best, > Panos > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
