Hello Freesurfer Experts, As a follow up question for bbregister, I used the --tmp and --epi-mask options, but I did not see a mask in the directory. I wanted to see if there is any way to output the B0/edge excluded epi-mask used in bbregister?
Thanks, Ajay On Tue, Apr 5, 2016 at 11:03 PM, Ajay Kurani <dr.ajay.kur...@gmail.com> wrote: > Hi Freesurfer Experts, > I was running bbregister and came across an issue. I have used > previous versions of bbregister (FS 5.3.0 with spm8) with the --init-spm at > it worked perfectly for a specific subject. > > I recently installed FS dev 6.0 with SPM12b and ran bbregister --init-spm > option with the same resting state scan, and it did not move at all. When > looking at the terminal I saw that when matlab started up within > bbregister, the command fs_spmreg was not found. I also installed spm8 and > reran the subject with the same issue. When I changed the option to > --init-fsl everything worked. I checked the matlab installation and > everything looks fine, so I think the issue may be the fs_spmreg function > not being found. I am not sure if there is an easy fix for this, but any > help would be appreciated. > > Thanks, > Ajay > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
