What is it doing in your glmdir? Usually you'd have it in another location when running mri_glmfit (which creates the glmdir). In any case, you can run it with --no-y and it will not look for the input file (and will not compute means over the clusters).
On 5/26/16 8:56 AM, Clara Kühn wrote: > Dear FreeSurfer Experts, > > when running the Monte Carlo correction on a GLM I specify this command: > mri_glmfit-sim --glmdir lh.gender_age.glmdir --cache 4 neg --cwp 0.05 > --2spaces > > This assumes that my mgh file that I used as input for the GLM is in > lh.gender_age.glmdir. That means though, that everytime I calculate a GLM and > create a new folder for this GLM I have to copy the mgh file into the glmdir > to run the Monte Carlo correction. Is there a way to specify where that mgh > is located so that I don't have a bunch of copies of it in all my glmdirs? > > Thanks for your help! > Cheers > Clara > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
