Does it perform a coregistration automatically when specified two images or is it better to perform it before running the recon-all ?
On Mon, Sep 19, 2016 at 3:34 PM, Iglesias Gonzalez, Eugenio < e.igles...@ucl.ac.uk> wrote: > Hi Renate, > as long as the additional scan is more or less aligned with the T1 in > physical coordinates (i.e., they appear decently aligned when you open them > in Freeview), you should be fine and not need to do anything. > Cheers, > /E > > Juan Eugenio Iglesias > Senior Research Fellow > Translational Imaging Group > University College London > http://www.jeiglesias.com > http://cmictig.cs.ucl.ac.uk/ > > > On 19 Sep 2016, at 14:31, Vaz pandolfo, Renata <r...@njit.edu> wrote: > > Dear Eugenio, > > We have another question about the Hippo Sf Segmentation with an > additional scan. > > Some of our additional scans (FLAIRs or T2s) have a bigger field of view > as compared to the T1 (ex.: they cover more of the neck almost up to the > shoulders of the subjects, while the T1 has the "normal" FoV). > > Should the additional scan be cropped or preprocessed in any way (ex.: > bias field correction)? And if so, should we process the T1 in the same > way or is it generally recommended to just use the raw images? > > Thank you! > > Renata > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- DEMAN Pierre Mobile : +33 7 82 57 80 94
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