On 12/22/2016 01:33 PM, neuroimage analyst wrote: > Hi, > > I am just curious whether the mask.mgh file returned in glmdir folder > created from lh.cortex.label? In part. It will also include any voxels that have 0 values in any of the inputs (--y) > > If so, how can I create my own surface mask from the label file? > (mri_label2vol and mri_vol2surf ?) mri_label2label with the --mask option > > > Second: How can I compare the subcortical volumes between the 2 groups > using glm tools in freesurfer? Specifically, how do I call > mris_preproc and mri_glmfit? Run asegstats2table to create a table, then run mri_glmfit as before but with --table instead of --y > > I appreciate your response. > > Thank you > > Regards > > --VM > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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