Hi, I am just curious whether the mask.mgh file returned in glmdir folder created from lh.cortex.label?
If so, how can I create my own surface mask from the label file? (mri_label2vol and mri_vol2surf ?) Second: How can I compare the subcortical volumes between the 2 groups using glm tools in freesurfer? Specifically, how do I call mris_preproc and mri_glmfit? I appreciate your response. Thank you Regards --VM
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