Hi Bruce, Does FS6 support the 'openmp 8' flag? I tried to use this flag with 'recon-all -all' on FS6, but it took longer time for only one subject.
Thank you, Aziz. On Fri, Feb 3, 2017 at 10:16 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Aziz > > with multiple course you can specify -openmp 8 for exmaple to use 8 cores, > which speeds things up a lot. It also depends how many recons you will be > running at the same time. A 16 core machine with 64G of ram would be able > to run 4 recons in a few hours each. > > cheers > Bruce > > > On Fri, 3 Feb 2017, Aziz Nanthaamornphong wrote: > > Hi experts, >> I would like to find a new high-performance computer to run the >> reconstruction process in Freesurfer. >> Currently, I used a single computer (Intel core i7, RAM 8MB) to run the >> commands (e.g., 'recon-all -all' >> ) that spent average time 7-9 hours per one subject data. >> >> Please let me know what the best spec of the computer that can reduce the >> time to 2-3 hours (if >> possible). >> >> Thank you, >> Aziz >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Aziz Nanthaamornphong, Ph.D., Chair of Master of Science Program in Information Technology Department of ICT Faculty of Technology and Environment Prince of Songkla University, Phuket Campus +66 7627 6716 (v) http://research.te.psu.ac.th/aziz
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