Hi Aziz
-openmp 4 will speed up the recon of a single subject. If you had 16
processors and enough RAM you could run 4 subjects at the same time that
way and each of them would be faster. We've had recons complete in 2-3
hours this way, depending on the anatomy.
cheers
Bruce
On Sat, 4 Feb 2017, Aziz
Nanthaamornphong wrote:
Hi Bruce,
So, I am not sure if I understand correct. Suppose, I would like to run 4
subjects simultenously, I have
to run the recon-all command of each subject on each terminal with -openmp.
Otherwise, is there any
other options to run 4 subjects in one terminal.
Thank you,
Aziz.
On Sat, Feb 4, 2017 at 9:46 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
yes it does, and it should significantly reduce execution time unless you
don't have
multiple cores
cheers
Bruce
On Sat, 4 Feb 2017, Aziz Nanthaamornphong wrote:
Hi Bruce,
Does FS6 support the 'openmp 8' flag? I tried to use this flag with
'recon-all
-all' on FS6, but it took
longer time for only one subject.
Thank you,
Aziz.
On Fri, Feb 3, 2017 at 10:16 PM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu>
wrote:
Hi Aziz
with multiple course you can specify -openmp 8 for exmaple to
use 8 cores,
which speeds
things up a lot. It also depends how many recons you will be
running at
the same time. A 16
core machine with 64G of ram would be able to run 4 recons in
a few hours
each.
cheers
Bruce
On Fri, 3 Feb 2017, Aziz Nanthaamornphong wrote:
Hi experts,
I would like to find a new high-performance computer to
run the
reconstruction
process in Freesurfer.
Currently, I used a single computer (Intel core i7, RAM
8MB) to run
the commands
(e.g., 'recon-all -all'
) that spent average time 7-9 hours per one subject
data.
Please let me know what the best spec of the computer
that can
reduce the time
to 2-3 hours (if
possible).
Thank you,
Aziz
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--
Aziz Nanthaamornphong, Ph.D.,
Chair of Master of Science Program in Information Technology
Department of ICT
Faculty of Technology and Environment
Prince of Songkla University, Phuket Campus
+66 7627 6716 (v)
http://research.te.psu.ac.th/aziz
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The information in this e-mail is intended only for the person to whom it is
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contains patient information, please contact the Partners Compliance HelpLine at
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