It seems that a freesurfer user just submitted a pull request yesterday that fixes this bug:
https://github.com/freesurfer/freesurfer/pull/24 Feel free to download the fixed version: https://github.com/freesurfer/freesurfer/blob/dev/scripts/bbregister On 03/17/2017 02:47 PM, Feilong Ma wrote: > Hi FreeSurfer Developers, > > I'm having trouble using bbregister with the `--init-best` flag, a > minimal example and error message is like this: > $> bbregister --s ag00 --mov data/ag00/align/raiders/run00_ref.nii.gz > --init-best --bold --lta data/ag00/align/raiders/run00_ref_to_anat.lta > ERROR: cannot spec an init method with --init-best > > It seems `InitCoreg` is set to 1 by default in the code of bbregister. > Therefore, when `--init-best` is also set, it would always trigger the > conflict detection and exit with the error message. > > Here are some related version information: > - FreeSurfer version: > freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c > - bbregister version: $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ > - OS: CentOS Linux release 7.3.1611 (Core) > > Best, > Feilong > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
