Hi all,
Actually I've images in Analyze7.5 format(.img/.hdr).
Can anyone help me to reconstruct('recon-all') for this format.
Thanks
Dilip
On Mon, Apr 10, 2017 at 12:14 PM, Nina Jacobsen <njaco...@student.aau.dk>
wrote:
> Hi Dilip.
>
> You have to place your files where the subject-directory points. If you
> dont change the directory yourself, this is under freesurfer/subjects.
>
> For more info about recon all, see https://surfer.nmr.mgh.
> harvard.edu/fswiki/recon-allhttps://surfer.nmr.mgh.harvard.
> edu/fswiki/recon-all
>
> Nina.
> ------------------------------
> *Fra:* freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.
> harvard.edu] på vegne af Dilip Puri [dilippurip...@gmail.com]
> *Sendt:* 10. april 2017 07:46
> *Til:* Freesurfer support list
> *Emne:* Re: [Freesurfer] segmentation help
>
> Hi,
>
> To-do "recon-all" where should I keep all the files. I mean in which
> directory. What are the command lines?
>
>
> Hope for response.
>
>
> Thanks
> Dilip
>
> On Sun, Apr 9, 2017 at 7:18 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
> wrote:
>
>> Hi Dilip
>>
>> you need to run your image through recon-all.
>>
>> cheers
>> Bruce
>>
>> On Sun, 9 Apr 2017, Dilip Puri
>> wrote:
>>
>> > Hi all,
>> >
>> > I've 200 analyze7.5 format images(OASIS Dataset) and I want to segment
>> > HippoCampus.
>> >
>> > My input file xyz.img and output file will be like xyz_seg.img which
>> > contains only hippocampus image it like Grond Truth image for my
>> original
>> > input image.
>> >
>> > Here is sample files including original and segmented mask link.
>> >
>> > Even I am very new to FREESURFER so I don't know the procedure to
>> > reconstruct the images.
>> >
>> >
>> > Kindly help me.
>> >
>> >
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