Probably you'll want to use mri_vol2vol so that you can incorporate your registration between the fMRI and the anatomical
On 04/10/2017 10:28 AM, Bruce Fischl wrote: > Hi Maria > > are they in register? If so you can do: > > mri_convert -rl fmri_data.mgh ribbon.mgz mask.mgz > mri_mask fmri_data.mgh mask.mgz masked_fmri.mgz > > cheers > Bruce > > > On Mon, 10 Apr 2017, Maria Hakonen wrote: > >> Dear Freesurfer experts, >> I have tried to mask fMRI data with grey matter mask as follows: >> mri_mask fmri_data.mgh ribbon.mgz masked_fmri.mgz >> >> However, I am getting an error " dimension mismatch between source >> and mask". >> >> Could someone please let me know how to solve this problem? >> >> Best, >> Maria >> >> > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
