I just did a test by downloading and extracting the tar, and I got all the expected files:
/usr/local/fstemp/freesurfer/tkmeditParcColorsCMA /usr/local/fstemp/freesurfer/mni /usr/local/fstemp/freesurfer/sources.csh /usr/local/fstemp/freesurfer/docs /usr/local/fstemp/freesurfer/Simple_surface_labels2009.txt /usr/local/fstemp/freesurfer/NOTICE /usr/local/fstemp/freesurfer/FreeSurferColorLUT.txt /usr/local/fstemp/freesurfer/DefectLUT.txt /usr/local/fstemp/freesurfer/subjects /usr/local/fstemp/freesurfer/LICENSE /usr/local/fstemp/freesurfer/fsafd /usr/local/fstemp/freesurfer/ASegStatsLUT.txt /usr/local/fstemp/freesurfer/diffusion /usr/local/fstemp/freesurfer/average /usr/local/fstemp/freesurfer/bin /usr/local/fstemp/freesurfer/SetUpFreeSurfer.sh /usr/local/fstemp/freesurfer/SegmentNoLUT.txt /usr/local/fstemp/freesurfer/README /usr/local/fstemp/freesurfer/sources.sh /usr/local/fstemp/freesurfer/data /usr/local/fstemp/freesurfer/SetUpFreeSurfer.csh /usr/local/fstemp/freesurfer/tktools /usr/local/fstemp/freesurfer/FreeSurferEnv.sh /usr/local/fstemp/freesurfer/fsfast /usr/local/fstemp/freesurfer/WMParcStatsLUT.txt /usr/local/fstemp/freesurfer/VERSION /usr/local/fstemp/freesurfer/build-stamp.txt /usr/local/fstemp/freesurfer/trctrain /usr/local/fstemp/freesurfer/lib /usr/local/fstemp/freesurfer/FreeSurferEnv.csh /usr/local/fstemp/freesurfer/AUTHORS /usr/local/fstemp/freesurfer/matlab /usr/local/fstemp/freesurfer/sessions Perhaps your file was not yet complete, or it was corrupted in some way. The md5sum of the tarball is 'd49e9dd61d6467f65b9582bddec653a4' which you can get by typing: md5sum freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz On 04/20/2017 08:04 AM, Ramesh Babu wrote: > Dear Experts, > > I have installed in /usr/local/freesurfer. I am trying to follow the > command given in the freesurfer web page. > > $> export FREESURFER_HOME=/usr/local/freesurfer $> source > $FREESURFER_HOME/SetUpFreeSurfer.sh > > But I could not figure out the .sh file in the freesurfer folder. Please > see the list of files in the freesurfer folder given below. > > List of files in the freesurfer folder; > > /usr/local/freesurfer/average > /usr/local/freesurfer/fsafd > /usr/local/freesurfer/fsfast > /usr/local/freesurfer/lib > /usr/local/freesurfer/sessions > /usr/local/freesurfer/tktools > /usr/local/freesurfer/trctrain > /usr/local/freesurfer/DefectLUT.txt > /usr/local/freesurfer/FreeSurferColorLUT.txt > /usr/local/freesurfer/FreeSurferEnv.csh > /usr/local/freesurfer/LICENSE > /usr/local/freesurfer/SetUpFreeSurfer.csh > /usr/local/freesurfer/sources.csh > /usr/local/freesurfer/sources.sh > /usr/local/freesurfer/tkmeditParcColorsCMA > /usr/local/freesurfer/VERSION > /usr/local/freesurfer/WMParcStatsLUT.txt > > You can notice that there is no SetUpFreeSurfer.sh file. > > Details about my pc; > > > Ubuntu 16.04 LTS, 64 bit is installed. Running w8.1 via virtual box. > Freesurfer is installed in Ubuntu OS. > > > I am using bash shell. > > pc@RB:~$ echo $0 > bash > > pc@RB:~$ echo $SHELL > /bin/bash > > pc@RB:~$ ps -p "$$" > PID TTY TIME CMD > 3706 pts/1 00:00:00 bash > > Need your help to run freesurfer in my pc. > > > Thanks in advance > > Ramesh > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
