Dear ZK, I have done md5sum check. I got the following message. How to confirm it is complete or not?
pc@RB:~/Downloads$ md5sum freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz 5362fc776145b06ded219f42af4a8207 freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz Thanks RB On Thu, Apr 20, 2017 at 7:32 PM, Z K <zkauf...@nmr.mgh.harvard.edu> wrote: > I just did a test by downloading and extracting the tar, and I got all > the expected files: > > /usr/local/fstemp/freesurfer/tkmeditParcColorsCMA > /usr/local/fstemp/freesurfer/mni > /usr/local/fstemp/freesurfer/sources.csh > /usr/local/fstemp/freesurfer/docs > /usr/local/fstemp/freesurfer/Simple_surface_labels2009.txt > /usr/local/fstemp/freesurfer/NOTICE > /usr/local/fstemp/freesurfer/FreeSurferColorLUT.txt > /usr/local/fstemp/freesurfer/DefectLUT.txt > /usr/local/fstemp/freesurfer/subjects > /usr/local/fstemp/freesurfer/LICENSE > /usr/local/fstemp/freesurfer/fsafd > /usr/local/fstemp/freesurfer/ASegStatsLUT.txt > /usr/local/fstemp/freesurfer/diffusion > /usr/local/fstemp/freesurfer/average > /usr/local/fstemp/freesurfer/bin > /usr/local/fstemp/freesurfer/SetUpFreeSurfer.sh > /usr/local/fstemp/freesurfer/SegmentNoLUT.txt > /usr/local/fstemp/freesurfer/README > /usr/local/fstemp/freesurfer/sources.sh > /usr/local/fstemp/freesurfer/data > /usr/local/fstemp/freesurfer/SetUpFreeSurfer.csh > /usr/local/fstemp/freesurfer/tktools > /usr/local/fstemp/freesurfer/FreeSurferEnv.sh > /usr/local/fstemp/freesurfer/fsfast > /usr/local/fstemp/freesurfer/WMParcStatsLUT.txt > /usr/local/fstemp/freesurfer/VERSION > /usr/local/fstemp/freesurfer/build-stamp.txt > /usr/local/fstemp/freesurfer/trctrain > /usr/local/fstemp/freesurfer/lib > /usr/local/fstemp/freesurfer/FreeSurferEnv.csh > /usr/local/fstemp/freesurfer/AUTHORS > /usr/local/fstemp/freesurfer/matlab > /usr/local/fstemp/freesurfer/sessions > > > Perhaps your file was not yet complete, or it was corrupted in some way. > The md5sum of the tarball is 'd49e9dd61d6467f65b9582bddec653a4' which > you can get by typing: > > md5sum freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz > > > On 04/20/2017 08:04 AM, Ramesh Babu wrote: > > Dear Experts, > > > > I have installed in /usr/local/freesurfer. I am trying to follow the > > command given in the freesurfer web page. > > > > $> export FREESURFER_HOME=/usr/local/freesurfer $> source > > $FREESURFER_HOME/SetUpFreeSurfer.sh > > > > But I could not figure out the .sh file in the freesurfer folder. Please > > see the list of files in the freesurfer folder given below. > > > > List of files in the freesurfer folder; > > > > /usr/local/freesurfer/average > > /usr/local/freesurfer/fsafd > > /usr/local/freesurfer/fsfast > > /usr/local/freesurfer/lib > > /usr/local/freesurfer/sessions > > /usr/local/freesurfer/tktools > > /usr/local/freesurfer/trctrain > > /usr/local/freesurfer/DefectLUT.txt > > /usr/local/freesurfer/FreeSurferColorLUT.txt > > /usr/local/freesurfer/FreeSurferEnv.csh > > /usr/local/freesurfer/LICENSE > > /usr/local/freesurfer/SetUpFreeSurfer.csh > > /usr/local/freesurfer/sources.csh > > /usr/local/freesurfer/sources.sh > > /usr/local/freesurfer/tkmeditParcColorsCMA > > /usr/local/freesurfer/VERSION > > /usr/local/freesurfer/WMParcStatsLUT.txt > > > > You can notice that there is no SetUpFreeSurfer.sh file. > > > > Details about my pc; > > > > > > Ubuntu 16.04 LTS, 64 bit is installed. Running w8.1 via virtual box. > > Freesurfer is installed in Ubuntu OS. > > > > > > I am using bash shell. > > > > pc@RB:~$ echo $0 > > bash > > > > pc@RB:~$ echo $SHELL > > /bin/bash > > > > pc@RB:~$ ps -p "$$" > > PID TTY TIME CMD > > 3706 pts/1 00:00:00 bash > > > > Need your help to run freesurfer in my pc. > > > > > > Thanks in advance > > > > Ramesh > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
