You will need to create an annotation with your label in it. This might
be tricky to do depending on what you want. The easy way is to run
mris_label2annot with only your label, then run mri_aparc2aseg to
generate something like the wmparc.mgz (look in the recon-all.log file
for the command line that generated wmparc.mgz but specify your annot
with --annot). View the label to make sure it is what you want, then run
mri_segstats.
On 5/9/17 7:23 AM, Josue Luiz Dalboni Da Rocha wrote:
Dear Freesurfer team,
I am working with calculated volumes of a gyrus (a costumized label).
I currently use mris_anatomical_stats to calculate the volumes of my
gyrus (in label format).
According to the freesurfer tutorial (as I understood), one of the
stats outputted from mris_anatomical_stats is the volume of the gray
matter surrounding the white/gray matter border (a surface) specified
by the inputted label.
We are actually interested in the white matter volume (instead of gray
matter volume) inside this ROI (a gyrus in our case) specified by the
label.
I didn't find yet a command in freesurfer from where I can extract the
white matter volume of a gyrus from a costumized label.
Could someone advise me?
Best regards,
Josue
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
