Hi Bruce,
Do you have any suggestions as to how to determine the correct directory and pathway to use? Sincerely, Jason Ledesma Staff Research Associate Phone: 1(424)571-7755 E-mail: jason.lede...@labiomed.org<mailto:jason.lede...@labiomed.org> ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Ledesma, Jason <jason.lede...@labiomed.org> Sent: Wednesday, August 30, 2017 1:39:30 PM To: Freesurfer support list Subject: Re: [Freesurfer] Freesurfer Preliminary Questions Bruce, It appears that the directory does not exist. See the following: fsuser@xubuntu-VirtualBox:~$ ls C:\tutorial data ls: cannot access C:tutorial: No such file or directory ls: cannot access data: No such file or directory fsuser@xubuntu-VirtualBox:~$ ls tutorial data ls: cannot access tutorial: No such file or directory ls: cannot access data: No such file or directory Here is what happens when doing a general ls command: fsuser@xubuntu-VirtualBox:~$ ls buckner_data-tutorial_subs error.log Pictures surfer.log Videos Desktop export Public tar Documents matlab setenv Templates Downloads Music source tutorial_data fsuser@xubuntu-VirtualBox:~$ ^C fsuser@xubuntu-VirtualBox:~$ ^C fsuser@xubuntu-VirtualBox:~$ Sincerely, Jason Ledesma Staff Research Associate Phone: 1(424)571-7755 E-mail: jason.lede...@labiomed.org<mailto:jason.lede...@labiomed.org> ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Bruce Fischl <fis...@nmr.mgh.harvard.edu> Sent: Wednesday, August 30, 2017 1:35:49 PM To: Freesurfer support list Subject: Re: [Freesurfer] Freesurfer Preliminary Questions thanks Jason does that directory exist? What happens if you try to ls it? Bruce On Wed, 30 Aug 2017, Ledesma, Jason wrote: > > Hi Bruce, > > > Here is the command that I tried and the resulting output/error message: > > > fsuser@xubuntu-VirtualBox:~$ export TUTORIAL_DATA=C:\tutorial data > fsuser@xubuntu-VirtualBox:~$ export > SUBJECTS_DIR=$TUTORIAL_DATA/buckner_data/tutorial_subjs > fsuser@xubuntu-VirtualBox:~$ cd $SUBJECTS_DIR > bash: cd: C:tutorial/buckner_data/tutorial_subjs: No such file or directory > fsuser@xubuntu-VirtualBox:~$ ^C > fsuser@xubuntu-VirtualBox:~$ > > > Sincerely, > > Jason Ledesma > Staff Research Associate > Phone: 1(424)571-7755 > E-mail: jason.lede...@labiomed.org > > ____________________________________________________________________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of > Bruce Fischl <fis...@nmr.mgh.harvard.edu> > Sent: Wednesday, August 30, 2017 1:24:12 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] Freesurfer Preliminary Questions > Hi Jason > > in general it is much easier for us if you can cut and paste text into > the email. Pictures are useful for showing things in the data and such > > cheers > Bruce > On > Wed, 30 Aug 2017, Ledesma, Jason wrote: > > > > > Hi Bruce, > > > > > > Thank you for your quick response. Attached are photos in number order > > which should help to > explain my situation. The first three photos depict the tutorial data as > > they are downloaded into my computer. Photo 4 illustrates the version of > > Freesurfer that I am > using. Photos 5 and 6 express how the downloaded tutorial data folder has > > been shared to Freesurfer. Photo 7 illustrates an example of the commands > > I have used. I have > tried other pathways as well but am still unsure which the proper command > > should be. Unix is in fact new to me. Let me know if you require any other > > details. Looking > forward to hearing your thoughts. > > > > > > Sincerely, > > > > Jason Ledesma > > Staff Research Associate > > Phone: 1(424)571-7755 > > E-mail: jason.lede...@labiomed.org > > > >___________________________________________________________________________________________________ > _____________________________________________________________________ > > From: freesurfer-boun...@nmr.mgh.harvard.edu > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of > Bruce Fischl <fis...@nmr.mgh.harvard.edu> > > Sent: Wednesday, August 30, 2017 12:10:24 PM > > To: Freesurfer support list > > Subject: Re: [Freesurfer] Freesurfer Preliminary Questions > > Hi Jason > > > > can you elaborate about what you mean by you "cannot interact with the > > data"? > > > > In general, please send us the full command you ran and all its screen > > output including whatever errros you encountered > > > > cheers > > Bruce > > On > > Wed, 30 Aug 2017, Ledesma, Jason wrote: > > > > > > > > To whom it may concern, > > > > > > > > > I am to attend the upcoming Freesurfer course session in Boston, and I > > > would like to ask a few > preliminary questions. I am currently attempting to run Freesurfer 5.3 > > > on a windows unit via the Oracle VM VirtualBox Manager. I have tried to > > > follow the instructions > of the tutorial thus far, but am having trouble properly downloading > > the > > > tutorial data into Freesurfer (the data I am attempting to acquire can > be found at > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData_freeview). I > have > > > tried setting up a shared folder and placing the data in a "Machine > > > Folder", but I still cannot > interact with the data. Do you know why this may be? I see that a > > > license key must first be obtained in some instances; perhaps this is the > > > reason there are > issues. Also, what is the best way to download the most recent version of > > > Freesurfer on windows? Thank you. > > > > > > > > > Sincerely, > > > > > > Jason Ledesma > > > Staff Research Associate > > > Phone: 1(424)571-7755 > > > E-mail: jason.lede...@labiomed.org > > > > >>__________________________________________________________________________________________________ > _____________________________________________________________________ > > _ > > > LA BioMed Warning: This email (and any attachments) is intended for the > > > use of the person to > which it is addressed. It may contain information that is privileged and > > > confidential. As the recipient, you are obligated to maintain it in a > > > safe, secure and > confidential manner. Unauthorized disclosure or failure to maintain > > > confidentiality may subject you to governmental penalties. Should you not > > > be the intended > recipient, please notify us by return email, and delete this message from > > your > > > computer at once. > > > > >>__________________________________________________________________________________________________ > _____________________________________________________________________ > > _ > > > > > > > > > > > >
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