Hi, Yes I can send you the data - should I just attach the mprage file in the email, or is there another way to share the data with freesurfer? Also, should I send one scan or multiple scans?
Thanks, Michelle On Sat, Nov 18, 2017 at 10:37 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Michelle > > are you doing anything out of the ordinary? Do you want to send us a > dataset and we will take a look? I don't think 6.0 is very different from > 5.3 in regard to skull stripping, although it is probably a bit better > > Bruce > > > On Fri, 17 Nov 2017, Michelle VanTieghem wrote: > > Hello, >> I have posted several times about problems with skull-stripping with our >> dataset. We have tried gcut >> and multiple other options in other packages (AFNI, FSL, ANTS) to remove >> skull from structural >> images in our dataset with little success. >> >> Recently, a colleague suggested this may be due to versions: that 6.0 >> deals with skull stripping >> much better than 5.3. >> >> I wanted to ask if indeed this could be the case before I go install 6.0 >> and re-run everything in >> my study. >> >> Thank you, >> Michelle >> >> -- >> Michelle VanTieghem >> PhD student in Psychology >> Developmental Affective Neuroscience Lab >> Columbia University >> mrv2...@columbia.edu >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > -- Michelle VanTieghem PhD student in Psychology Developmental Affective Neuroscience Lab Columbia University mrv2...@columbia.edu
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