Hi, I am confused by the instructions for the ftp. Once I am logged into the ftp and have navigated to the transfer/incoming directory, how am I supposed to find / access the file that I would ike to send through? Does terminal still recognize my working directory before I logged into the ftp?
Thanks! Michelle On Sat, Nov 18, 2017 at 2:54 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Michelle > > probably best to tar and gzip the entire subject directory and ftp it to > us: > > https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange > > cheers > Bruce > > > On Sat, 18 Nov 2017, Michelle VanTieghem wrote: > > Hi, >> Yes I can send you the data - should I just attach the mprage file in the >> email, or is there another >> way to share the data with freesurfer? Also, should I send one scan or >> multiple scans? >> >> Thanks, >> Michelle >> >> On Sat, Nov 18, 2017 at 10:37 AM, Bruce Fischl < >> fis...@nmr.mgh.harvard.edu> wrote: >> Hi Michelle >> >> are you doing anything out of the ordinary? Do you want to send us >> a dataset and we will >> take a look? I don't think 6.0 is very different from 5.3 in regard >> to skull stripping, >> although it is probably a bit better >> >> Bruce >> >> On Fri, 17 Nov 2017, Michelle VanTieghem wrote: >> >> Hello, >> I have posted several times about problems with >> skull-stripping with our >> dataset. We have tried gcut >> and multiple other options in other packages (AFNI, FSL, >> ANTS) to remove >> skull from structural >> images in our dataset with little success. >> >> Recently, a colleague suggested this may be due to versions: >> that 6.0 deals >> with skull stripping >> much better than 5.3. >> >> I wanted to ask if indeed this could be the case before I go >> install 6.0 >> and re-run everything in >> my study. >> >> Thank you, >> Michelle >> >> -- >> Michelle VanTieghem >> PhD student in Psychology >> Developmental Affective Neuroscience Lab >> Columbia University >> mrv2...@columbia.edu >> >> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> >> -- >> Michelle VanTieghem >> PhD student in Psychology >> Developmental Affective Neuroscience Lab >> Columbia University >> mrv2...@columbia.edu >> >> -- Michelle VanTieghem PhD student in Psychology Developmental Affective Neuroscience Lab Columbia University mrv2...@columbia.edu
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