Hi I have a series of T1 images that I have transformed in Freesurfer to .nii.gz images in talairach space with mri_convert -at transforms/talairach.xfm. I am using the skull-stripped image brain.mgz produced by recon-all.
When I view them in freeview they look well-registered, and similarly when I view them in MRIcron. However, if I use FSLeyes they seem to have a different origin for each subject, and fslmerge complains that they have Inconsistent orientations. Is there any inconsistency that you know of between freeview and FSLeyes? Helen Beaumont PhD _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.