I've never used FSLeyes so I can't say
On 01/23/2018 01:05 PM, Helen Beaumont wrote: > Hi > > I have a series of T1 images that I have transformed in Freesurfer to > .nii.gz images in talairach space with mri_convert -at > transforms/talairach.xfm. I am using the skull-stripped image brain.mgz > produced by recon-all. > > When I view them in freeview they look well-registered, and similarly > when I view them in MRIcron. However, if I use FSLeyes they seem to have > a different origin for each subject, and fslmerge complains that they > have Inconsistent orientations. > > Is there any inconsistency that you know of between freeview and FSLeyes? > > Helen Beaumont PhD > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
