Sorry, just seeing that you also want cortical summaries. Those might be
easier. You should run recon-all on the T1 template for the hammersmith.
You can then create your own hammersmith annotation by mapping the atlas
labels onto the surface (mri_vol2surf) and then mris_seg2annot. You can
then use mris_apply_reg to map the annotation to the surface of an
individual (or fsaverage).
On 4/16/18 3:14 PM, Ryan Flores wrote:
Hi Freesurfer Developers,
Our group is hoping to obtain the cortical thickness, surface area,
and volume for various cortical regions (as well as some subcortical
volumes); however, we would like these values to be outputted with
respect to the regions delineated in the Hammersmith atlas. This atlas
is available for free online
(http://brain-development.org/brain-atlases/adult-brain-maximum-probability-map-hammers-mith-atlas-n30r83-in-mni-space/)
and I’ve included a screenshot to show you what files are included in
the download. Based on this information, what is the best and/or most
straight forward to move forward?
Thank you for your time. I look forward to hearing from you.
1. FreeSurfer version:
freesurfer-i386-apple-darwin11.4.2-stable6-20170119
2. Platform: macOS High Sierra (Version 10.13.1)
Best,
Ryan
--
Ryan Flores
Clinical Research Coordinator
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