can you send me Hammers_mith_atlas_n30r83_SPM5.nii.gz ?
On 04/17/2018 07:55 PM, Ryan Flores wrote: > > Hi Doug, > > Thank you for your response. I attempted to run recon-all on the > Hammersmith nifti file as suggested, but unfortunately it appears to > have run into some issues. I’ve attached the recon-all.log for reference. > > Best, > > Ryan > > -- > > Ryan Flores > > Clinical Research Coordinator > > *From: *<[email protected]> on behalf of Douglas > Greve <[email protected]> > *Reply-To: *Freesurfer support list <[email protected]> > *Date: *Tuesday, April 17, 2018 at 9:33 AM > *To: *"[email protected]" <[email protected]> > *Subject: *Re: [Freesurfer] Recon-all w/ Hammersmith atlas > > Sorry, just seeing that you also want cortical summaries. Those might > be easier. You should run recon-all on the T1 template for the > hammersmith. You can then create your own hammersmith annotation by > mapping the atlas labels onto the surface (mri_vol2surf) and then > mris_seg2annot. You can then use mris_apply_reg to map the annotation > to the surface of an individual (or fsaverage). > > On 4/16/18 3:14 PM, Ryan Flores wrote: > > Hi Freesurfer Developers, > > Our group is hoping to obtain the cortical thickness, surface > area, and volume for various cortical regions (as well as some > subcortical volumes); however, we would like these values to be > outputted with respect to the regions delineated in the > Hammersmith atlas. This atlas is available for free online > > (http://brain-development.org/brain-atlases/adult-brain-maximum-probability-map-hammers-mith-atlas-n30r83-in-mni-space/) > and I’ve included a screenshot to show you what files are included > in the download. Based on this information, what is the best > and/or most straight forward to move forward? > > Thank you for your time. I look forward to hearing from you. > > 1. FreeSurfer version: > freesurfer-i386-apple-darwin11.4.2-stable6-20170119 > 2. Platform: macOS High Sierra (Version 10.13.1) > > Best, > > Ryan > > -- > > Ryan Flores > > Clinical Research Coordinator > > > > > _______________________________________________ > > Freesurfer mailing list > > [email protected]<mailto:[email protected]> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
