The "intensity" is the mean value of the input (lh.pial_lgi in this
case) averaged over vertices. If you wan the total number, multiply it
by the number of vertices or re-run with --accumulate. The area is the
surface area of the entire lobe.
On 4/18/18 3:23 PM, Fernanda Hansen P. de Moraes wrote:
Sorry, my mistake.
mri_segstats --annot DA011 lh lobesStrict --i DA011/surf/lh.pial_lgi
--sum lh.lobesStrict.annot.pial_lgi.stats
On Wed, Apr 18, 2018 at 4:13 PM Douglas N. Greve
<dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote:
What is your command line? Also, please remember to post to the list
On 04/18/2018 02:10 PM, Fernanda Hansen P. de Moraes wrote:
> Dear Douglas,
>
> thank you.
>
> The code worked, but I didn't understand the result very well.
What
> means intensity? The area, is the ara from the piall_lgi surface
> (outer surface)?
>
> Thank you again
>
> On Tue, Apr 17, 2018 at 1:07 PM Douglas Greve
<dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>
> <mailto:dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>>>
wrote:
>
> If you run it with --help you will see an example
>
>
> On 4/16/18 7:16 AM, Fernanda Hansen P. de Moraes wrote:
>> Thank you, Douglas,
>>
>> do you have any suggestions on how to make you work?
>>
>> Fernanda
>>
>>
>>
>> On Fri, Apr 13, 2018 at 5:56 PM Douglas Greve
>> <dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>
<mailto:dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>>>
wrote:
>>
>> that should work, except the command line is not quite
right
>>
>>
>> On 4/13/18 4:22 PM, Fernanda Hansen P. de Moraes wrote:
>>> Good night,
>>>
>>> does anyone know if it is possible to calculate the
lGI for
>>> the ?h.lobesStrict.annot? And if it yes, how can I do it?
>>>
>>> I've already tried to use:
>>>
>>> /mri_segstats --annot
subjxx/label/lh.lobesStrict.annot --i
>>> $SUBJECTS_DIR/subjxx/surf/lh.pial_lgi --sum
>>> lh.lobesStrict.annot.pial_lgi.stats/
>>>
>>> Thank you!
>>> --
>>> Fernanda Hansen P. de Moraes
>>> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede
>>> D'Or São Luiz
>>>
>>>
>>> _______________________________________________
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>> <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>> The information in this e-mail is intended only for the
>> person to whom it is
>> addressed. If you believe this e-mail was sent to you in
>> error and the e-mail
>> contains patient information, please contact the Partners
>> Compliance HelpLine at
>> http://www.partners.org/complianceline . If the e-mail was
>> sent to you in error
>> but does not contain patient information, please
contact the
>> sender and properly
>> dispose of the e-mail.
>>
>> --
>> Fernanda Hansen P. de Moraes
>> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or
>> São Luiz
>>
>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>> <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
> --
> Fernanda Hansen P. de Moraes
> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or
São Luiz
--
Fernanda Hansen P. de Moraes
Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
