External Email - Use Caution Thank you!! :D
On Thu, Apr 19, 2018 at 12:57 PM Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > yes > > > On 04/19/2018 07:17 AM, Fernanda Hansen P. de Moraes wrote: > > Douglas, thank you very much again. > > So I can assume it is the lGI for the area (in this case the lobe)? > > > > Thank you again! > > > > On Wed, Apr 18, 2018 at 11:48 PM Douglas Greve <dgr...@mgh.harvard.edu > > <mailto:dgr...@mgh.harvard.edu>> wrote: > > > > The "intensity" is the mean value of the input (lh.pial_lgi in > > this case) averaged over vertices. If you wan the total number, > > multiply it by the number of vertices or re-run with --accumulate. > > The area is the surface area of the entire lobe. > > > > > > On 4/18/18 3:23 PM, Fernanda Hansen P. de Moraes wrote: > >> Sorry, my mistake. > >> > >> mri_segstats --annot DA011 lh lobesStrict --i > >> DA011/surf/lh.pial_lgi --sum lh.lobesStrict.annot.pial_lgi.stats > >> > >> On Wed, Apr 18, 2018 at 4:13 PM Douglas N. Greve > >> <dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote: > >> > >> What is your command line? Also, please remember to post to > >> the list > >> > >> > >> On 04/18/2018 02:10 PM, Fernanda Hansen P. de Moraes wrote: > >> > Dear Douglas, > >> > > >> > thank you. > >> > > >> > The code worked, but I didn't understand the result very > >> well. What > >> > means intensity? The area, is the ara from the piall_lgi > >> surface > >> > (outer surface)? > >> > > >> > Thank you again > >> > > >> > On Tue, Apr 17, 2018 at 1:07 PM Douglas Greve > >> <dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu> > >> > <mailto:dgr...@mgh.harvard.edu > >> <mailto:dgr...@mgh.harvard.edu>>> wrote: > >> > > >> > If you run it with --help you will see an example > >> > > >> > > >> > On 4/16/18 7:16 AM, Fernanda Hansen P. de Moraes wrote: > >> >> Thank you, Douglas, > >> >> > >> >> do you have any suggestions on how to make you work? > >> >> > >> >> Fernanda > >> >> > >> >> > >> >> > >> >> On Fri, Apr 13, 2018 at 5:56 PM Douglas Greve > >> >> <dgr...@mgh.harvard.edu > >> <mailto:dgr...@mgh.harvard.edu> > >> <mailto:dgr...@mgh.harvard.edu > >> <mailto:dgr...@mgh.harvard.edu>>> wrote: > >> >> > >> >> that should work, except the command line is not > >> quite right > >> >> > >> >> > >> >> On 4/13/18 4:22 PM, Fernanda Hansen P. de Moraes > >> wrote: > >> >>> Good night, > >> >>> > >> >>> does anyone know if it is possible to calculate > >> the lGI for > >> >>> the ?h.lobesStrict.annot? And if it yes, how can > >> I do it? > >> >>> > >> >>> I've already tried to use: > >> >>> > >> >>> /mri_segstats --annot > >> subjxx/label/lh.lobesStrict.annot --i > >> >>> $SUBJECTS_DIR/subjxx/surf/lh.pial_lgi --sum > >> >>> lh.lobesStrict.annot.pial_lgi.stats/ > >> >>> > >> >>> Thank you! > >> >>> -- > >> >>> Fernanda Hansen P. de Moraes > >> >>> Física Médica | Instituto D'Or de Pesquisa e > >> Ensino | Rede > >> >>> D'Or São Luiz > >> >>> > >> >>> > >> >>> _______________________________________________ > >> >>> Freesurfer mailing list > >> >>> Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> >>> <mailto:Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> >>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> >> > >> >> _______________________________________________ > >> >> Freesurfer mailing list > >> >> Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> >> <mailto:Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> >> > >> >> > >> >> The information in this e-mail is intended only > >> for the > >> >> person to whom it is > >> >> addressed. If you believe this e-mail was sent to > >> you in > >> >> error and the e-mail > >> >> contains patient information, please contact the > >> Partners > >> >> Compliance HelpLine at > >> >> http://www.partners.org/complianceline . If the e-mail was > >> >> sent to you in error > >> >> but does not contain patient information, please > >> contact the > >> >> sender and properly > >> >> dispose of the e-mail. > >> >> > >> >> -- > >> >> Fernanda Hansen P. de Moraes > >> >> Física Médica | Instituto D'Or de Pesquisa e Ensino | > >> Rede D'Or > >> >> São Luiz > >> >> > >> >> > >> >> _______________________________________________ > >> >> Freesurfer mailing list > >> >> Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> >> <mailto:Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > > >> > -- > >> > Fernanda Hansen P. de Moraes > >> > Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede > >> D'Or São Luiz > >> > >> -- > >> Fernanda Hansen P. de Moraes > >> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or > >> São Luiz > > > > -- > > Fernanda Hansen P. de Moraes > > Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz > > -- Fernanda Hansen P. de Moraes Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
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