Is the atlas in GCA format? If so, then you can use gca-apply
On 04/19/2018 10:09 AM, Ting Li wrote: > Hi Freesurfer Experts, > > We want to run recon-all with a custom atlas which is generated from > ANTs multivariate template construction. What is the right procedure > to run recon-all? Run recon-all to my atlas itself first and them use > this output as a template or I use the custom template directly. I > looked up your email database to search related topic and got lost. I > have sent another email to your group and no response received. Please > help me. > > Thanks for you time. I look forward to hearing from you. > > Best, > Ting > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
