External Email - Use Caution Hi Eugenio and Bruce,
We used freesurfer-6.0.0 to segment the brain-stem into different different structures. I see we get two mgz files after this process: aparc+aseg.mgz and brainstemSsLabels.v10.FSvoxelSpace.mgz Do you have any recommendations to combine these two masks into a single mask ? I see pons in brainstemSsLabels.v10.FSvoxelSpace.mgz overlaps with the brain-stem in aparc+aseg.mgz but the midbrain in brainstemSsLabels.v10.FSvoxelSpace.mgz overlaps with brain-stem and the ventral-dc in aparc+aseg.mgz. Any recommendations are appreciated. Thanks Mehul
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