Hi Chris
you need to give us more information. What commands did you run? What was
their output? Also, if you can send images of what you think is incorrect
that might also be helpful
cheers
Bruce
On Mon, 17 Sep 2018, Chris Adamson wrote:
External Email - Use Caution
Freesurfer experts,
I’m having an issue with projecting labels from an atlas to a subject. I have a
static annot file on
the atlas that I want to paint onto my subject. The pipeline I have performed
is to mris_register my
subject to the atlas and then mri_surf2surf on the annot file using the
registered spherical
surfaces.
The labels, when painted, are incorrectly oriented. How can I debug the output
of the registration
to check if the registration is working? I assume the registration works in the
2D parameterised
space, can I extract parameterised versions of the curvature maps at each
iteration of the
registration.
The strange thing is that when I view the spherical surfaces in freeview with
the overlaid curvature
maps they look in alignment prior to registration, but using this unregistered
sphere still puts the
labels in an incorrect orientation. So it appears as if there is some rotation
that is being done
internally that isn’t shown in freeview.
Please advise,
Chris.
Dr Chris Adamson
Senior Research Officer
Developmental Imaging, Clinical Sciences
Murdoch Childrens Research Institute
The Royal Children’s Hospital
Flemington Road, Parkville, VIC 3052 Australia
E chris.adam...@mcri.edu.au
www.mcri.edu.au
This e-mail and any attachments to it (the "Communication") are, unless
otherwise stated,
confidential, may contain copyright material and is for the use only of the
intended recipient. If
you receive the Communication in error, please notify the sender immediately by
return e-mail,
delete the Communication and the return e-mail, and do not read, copy,
retransmit or otherwise deal
with it. Any views expressed in the Communication are those of the individual
sender only, unless
expressly stated to be those of Murdoch Childrens Research Institute (MCRI) ABN
21 006 566 972 or
any of its related entities. MCRI does not accept liability in connection with
the integrity of or
errors in the Communication, computer virus, data corruption, interference or
delay arising from or
in respect of the Communication.
P Please consider the environment before printing this email
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
