External Email - Use Caution Thanks Bruce.
I had to increase the angular search range in the affine part to get it to work. Cheers, Chris. From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Bruce Fischl Sent: Monday, 17 September 2018 11:49 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] mris_register problem Hi Chris you need to give us more information. What commands did you run? What was their output? Also, if you can send images of what you think is incorrect that might also be helpful cheers Bruce On Mon, 17 Sep 2018, Chris Adamson wrote: > > External Email - Use Caution > > Freesurfer experts, > > > > I'm having an issue with projecting labels from an atlas to a subject. I have > a static annot file on > the atlas that I want to paint onto my subject. The pipeline I have performed > is to mris_register my > subject to the atlas and then mri_surf2surf on the annot file using the > registered spherical > surfaces. > > > > The labels, when painted, are incorrectly oriented. How can I debug the > output of the registration > to check if the registration is working? I assume the registration works in > the 2D parameterised > space, can I extract parameterised versions of the curvature maps at each > iteration of the > registration. > > > > The strange thing is that when I view the spherical surfaces in freeview with > the overlaid curvature > maps they look in alignment prior to registration, but using this > unregistered sphere still puts the > labels in an incorrect orientation. So it appears as if there is some > rotation that is being done > internally that isn't shown in freeview. > > > > Please advise, > > > > Chris. > > > > Dr Chris Adamson > > Senior Research Officer > > Developmental Imaging, Clinical Sciences > > > > Murdoch Childrens Research Institute > > The Royal Children's Hospital > > Flemington Road, Parkville, VIC 3052 Australia > > E chris.adam...@mcri.edu.au<mailto:chris.adam...@mcri.edu.au> > > www.mcri.edu.au<http://www.mcri.edu.au> > > > > > > This e-mail and any attachments to it (the "Communication") are, unless > otherwise stated, > confidential, may contain copyright material and is for the use only of the > intended recipient. If > you receive the Communication in error, please notify the sender immediately > by return e-mail, > delete the Communication and the return e-mail, and do not read, copy, > retransmit or otherwise deal > with it. Any views expressed in the Communication are those of the individual > sender only, unless > expressly stated to be those of Murdoch Childrens Research Institute (MCRI) > ABN 21 006 566 972 or > any of its related entities. MCRI does not accept liability in connection > with the integrity of or > errors in the Communication, computer virus, data corruption, interference or > delay arising from or > in respect of the Communication. > > > > P Please consider the environment before printing this email > > > > > Disclaimer This e-mail and any attachments to it (the "Communication") are, unless otherwise stated, confidential, may contain copyright material and is for the use only of the intended recipient. If you receive the Communication in error, please notify the sender immediately by return e-mail, delete the Communication and the return e-mail, and do not read, copy, retransmit or otherwise deal with it. Any views expressed in the Communication are those of the individual sender only, unless expressly stated to be those of Murdoch Children’s Research Institute (MCRI) ABN 21 006 566 972 or any of its related entities. MCRI does not accept liability in connection with the integrity of or errors in the Communication, computer virus, data corruption, interference or delay arising from or in respect of the Communication.
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