Hi Yerong mri_aparc2aseg combines the aseg and the aparc to generate files like the aparc+aseg.mgz. You can look in the recon-all.log or recon-all.cmd file to see how it is run (or the help)
cheers Bruce On Tue, 8 Jan 2019, Yerong Li wrote: > External Email - Use Caution > > Dear Freesurfer experts: > > In notice "mris_sample_parc" samples a volumetric parcellation onto a > surface, I am trying to find a program that samples "annot" files to > volumetric parcellations. I need to know the connection between labels > in [lh.aparc.annot, rh.aparc.annot] and labels in [aparc+aseg.mgz]. > > I am expecting a program with two inputs [lh.aparc.annot, > rh.aparc.annot] and output [aparc+aseg.mgz] > > ** Basically I have fibers from tracking algorithms and I am > reconstructing connectivity matrices on the surface parcellation, > that's why I need the subcortical segmentation file aparc+aseg.mgz. > > Yerong > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
