Hi Vale

mri_surf2vol is to take take from the surface to the volume within one subject. Why do you need a trgsubject? You can compute the registration with e.g. bbregister. Maybe I'm not understanding what you are trying to do....

cheers
Bruce

On Sat, 16 Feb 2019, Barletta, Valeria wrote:


Dear all, 

I am trying to register surfaces to a volume by this command:

mri_surf2vol --subject MS089_R01_29 --hemi rh --rh.MS089_R01_29.subjspace.mgh 
--hemi lh --surfval
lh.MS089_R01_29.subjspace.mgh --o CME_MS089_R01_29.nii.gz --merge 
combined-CL.nii.gz --trgsubj
MS089_R01_29


And am obtaining this error:

ERROR: Option --trgsubject unknown


That is actually the name of my subject in $FREESURFER_HOME

Also, I do not have a registration file so I used the option --trgsubject

Is this correct? Why am I getting that error?

Thanks,

Vale



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