Oh I just used that option instead of providing a registration file, which I don't have. I need to turn the two surfaces into a single volume.
Get Outlook for Android<https://aka.ms/ghei36> ________________________________ From: [email protected] <[email protected]> on behalf of Bruce Fischl <[email protected]> Sent: Saturday, February 16, 2019 6:58:46 PM To: Freesurfer support list Subject: Re: [Freesurfer] surf2vol ERROR Hi Vale mri_surf2vol is to take take from the surface to the volume within one subject. Why do you need a trgsubject? You can compute the registration with e.g. bbregister. Maybe I'm not understanding what you are trying to do.... cheers Bruce On Sat, 16 Feb 2019, Barletta, Valeria wrote: > > Dear all, > > I am trying to register surfaces to a volume by this command: > > mri_surf2vol --subject MS089_R01_29 --hemi rh --rh.MS089_R01_29.subjspace.mgh > --hemi lh --surfval > lh.MS089_R01_29.subjspace.mgh --o CME_MS089_R01_29.nii.gz --merge > combined-CL.nii.gz --trgsubj > MS089_R01_29 > > > And am obtaining this error: > > ERROR: Option --trgsubject unknown > > > That is actually the name of my subject in $FREESURFER_HOME > > Also, I do not have a registration file so I used the option --trgsubject > > Is this correct? Why am I getting that error? > > Thanks, > > Vale > > > >
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