It looks like the library is not set up properly. Does freesurfer work outside of matlab?
On 3/14/19 1:46 PM, Miguel Ángel Rivas Fernández wrote: > > External Email - Use Caution > > > Dear Freesurfer devs, > > > Have you had occasion to review this error?. Could it be due to the > gcc version? > > Thank you very much for your help. > > > Best regards, > > El mié., 13 mar. 2019 a las 16:09, Miguel Ángel Rivas Fernández > (<miguelrivasf...@gmail.com <mailto:miguelrivasf...@gmail.com>>) escribió: > > > Dear Freesurfer experts, > > I am trying to run Freesurfer commands (eg. mri_ca_label) using > Matlab in a Mac computer (macOS High Sierra 10.13.6 version) > and I'm receiving the following error that I suspect are due to > library incompatibilities: > > > dyld: lazy symbol binding failed: Symbol not found: > ___emutls_get_address > Referenced from: > /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib > Expected in: /usr/lib/libSystem.B.dylib > > dyld: Symbol not found: ___emutls_get_address > Referenced from: > /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib > Expected in: /usr/lib/libSystem.B.dylib > > mris_ca_label -aseg > /Applications/freesurfer/subjects/10018/mri/aseg.mgz -seed 1234 > 10018 lh > /Applications/freesurfer/subjects/10018/surf/lh.sphere.reg > > /Applications/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs > /Applications/freesurfer/subjects/10018/label/lh.aparc.annot: Aborted > > ans = > > 134 > > > > I realized that this error has been previously reported > > <https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2017-November/054961.html> > and, as Andrew said, one of the possible solutions could be to > disable the SIP (System Protection Integrity). I have disabled the > SIP following the instructions indicated here > > <http://osxdaily.com/2015/10/05/disable-rootless-system-integrity-protection-mac-os-x/> > but unfortunately Matlab continues giving the same error. > > > How could I solve this problem?. Any help would be appreciated. > > > Thanks in advance. > > Best, > > -- > *Miguel Ángel Rivas Fernández* > > > > -- > *Miguel Ángel Rivas Fernández* > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
