External Email - Use Caution Thankyou, Sir. It really helped me a lot.
On Sat, Apr 20, 2019 at 11:46 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > What command did you use to apply the transform? If mri_convert add -rt > nearest to your command line. > The issue is that you are using trilinear interpolation our a label map > instead of nearest neighbor > > On Apr 20, 2019, at 5:22 AM, Sadia Sheikh <sheikh.sadi...@gmail.com> > wrote: > > External Email - Use Caution > > Dear FreeSurfer experts > > I did brainstem segmentation using BrainstemSubstructure method. Then > after segmentation, I aligned all my segmented brainstem to Talairach > coordinates using transform=$SUBJECTS_DIR/$s/mri/transforms/talairach.xfm. > Alignment seems to be fine. But the boundary of the aligned brainstem > looks distorted with different other colors. Why does the boundary look > like this? and how can I improve this? > I have attached the image of brainstem after alignment. > > Thanks in advance. > > Regards > Sadia > Research Student > > > > <https://www.avast.com/en-in/recommend?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=default3&tag=3530826a-819e-47f1-a448-b4bc56ebebed> > I’m > protected online with Avast Free Antivirus. Get it here — it’s free > forever. > <https://www.avast.com/en-in/recommend?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=default3&tag=3530826a-819e-47f1-a448-b4bc56ebebed> > <#m_7470614486553680194_DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> > > <Capture.JPG> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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