External Email - Use Caution ---------- Forwarded message ---------- From: *abedi...@citymail.cuny.edu <abedi...@citymail.cuny.edu>* < abedi...@citymail.cuny.edu> Date: Tuesday, May 21, 2019 Subject: To: "amibedi...@gmail.com" <amibedi...@gmail.com>
Hi Freesurfer developers, While running the mri glmfit sim command for a smoothing of 30 FWHM, I got the following error- Original mri_glmfit command line: cmdline mri_glmfit.bin --y lh.BINGE15.g2v1.30B.mgh --fsgd BINGE15.g2v1.txt dods --C BINGE.g2v1.group-x-LDH_age.mtx --surf fsaverage lh --cortex --glmdir lh.BINGE15_g2v1.group-x-LDH_age.30B.glmdir DoSim = 0 UseCache = 1 DoPoll = 0 DoPBSubmit = 0 DoBackground = 0 DiagCluster = 0 gd2mtx = dods fwhm = 53.156463 ERROR: cannot find /usr/local/freesurfer/average/mult-comp-cor/fsaverage/lh/ cortex/fwhm53/abs/th13/mc-z.csd I researched on the Freesurfer wiki page and found Dr Greve answered a similar question saying-"When running mri_glmfit-sim, add --cache-dir /path/to/mult-comp-cor" but I dont understand. What is this path? Thank You! Best, Amrita
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