External Email - Use Caution Hi Dr Greve,
Is it not possible to use Monte Carlo for 30 FWHM? Best, Amrita On Tuesday, May 21, 2019, Greve, Douglas N.,Ph.D. <dgr...@mgh.harvard.edu> wrote: > You have applied a lot of smoothing, and the tables don't go up that high. > Usually people will apply 5-10mm of smoothing. If you really want that much > smoothing, you should use permutation. See https://surfer.nmr.mgh. > harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm > > On 5/21/2019 10:09 AM, Amrita Bedi wrote: > > External Email - Use Caution > > > ---------- Forwarded message ---------- > From: *abedi...@citymail.cuny.edu <abedi...@citymail.cuny.edu>* < > abedi...@citymail.cuny.edu> > Date: Tuesday, May 21, 2019 > Subject: > To: "amibedi...@gmail.com" <amibedi...@gmail.com> > > > Hi Freesurfer developers, > > While running the mri glmfit sim command for a smoothing of 30 FWHM, I got > the following error- > > Original mri_glmfit command line: > cmdline mri_glmfit.bin --y lh.BINGE15.g2v1.30B.mgh --fsgd BINGE15.g2v1.txt > dods --C BINGE.g2v1.group-x-LDH_age.mtx --surf fsaverage lh --cortex > --glmdir lh.BINGE15_g2v1.group-x-LDH_age.30B.glmdir > > DoSim = 0 > UseCache = 1 > DoPoll = 0 > DoPBSubmit = 0 > DoBackground = 0 > DiagCluster = 0 > gd2mtx = dods > fwhm = 53.156463 > ERROR: cannot find /usr/local/freesurfer/average/ > mult-comp-cor/fsaverage/lh/cortex/fwhm53/abs/th13/mc-z.csd > > > I researched on the Freesurfer wiki page and found Dr Greve answered a > similar question saying-"When running mri_glmfit-sim, add --cache-dir > /path/to/mult-comp-cor" but I dont understand. What is this path? > > Thank You! > > Best, > Amrita > > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >
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