I don't know what the Brainnetome is, but it looks like you have it in annotation form. I think that command should work. Why are you using --no-xcerseg? This will cause it to not include extracerebral structures. Also note that you cannot use arbitrarily small segments when doing PVC.
On 8/13/19 10:26 AM, Boris Rauchmann wrote: > > External Email - Use Caution > > Dear all, > > my intention is to use the Brainnetome Atlas parcellation/segmentation > in PETSurfer to obtain PVC corrected SUVRs for the atlas ROIs. I used: > > gtmseg --s XYZ --o BN.gtmseg.mgz --ctx-annot BN_Atlas.annot --ctab > '/media/XYZ/BN_Atlas_freesurfer/BN_Atlas_246_LUT.txt' --no-xcerseg > > Is this the right approach to obtain a high resolution segmentation to > run PVC methods? > > Thanks, > Boris > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
