External Email - Use Caution I run the command that you told me (mri_binarize --i aseg.presurf.mgz --match 229 --o bin229.mgz) and I get a mask with one voxel.
How can I do to solve it? Thank you. Marina. El lun., 7 oct. 2019 a las 23:19, Greve, Douglas N.,Ph.D. (< dgr...@mgh.harvard.edu>) escribió: > We'll have to figure out where those 229s are coming from. Try this > mri_binarize --i aseg.presurf.mgz --match 229 --o bin229.mgz > It should print out whether there were any voxels that matched. If so, you > can load bin229.mgz with the norm.mgz and the aseg.presurf.mgz and see > where they are. If there are not any, then do the same thing with > aparc+aseg.mgz > > On 10/7/2019 4:54 PM, Marina Fernández wrote: > > External Email - Use Caution > Dear Douglas, > > Sorry! This is the previous information: > > > > Dear Douglas, > > > > Thank you for the replay. > > > > I think so, I can't find the code 229 in any subject. > > > > I can't see anything strange in the aparc+aseg.mgz. The cerebral voxels > have the normal > > segmentation and labels. Could it be a problem with the > extracerebral voxels? > > > > Best regards, > > Marina. > > > > That is kind of weird. It says it has found a segmentation with number > > 229, but we don't have that code in our system. Can you find the 229 > voxels > > in the aparc+aseg.mgz? > > > > > Dear experts, > > > > The following error occurs with one subject when I am running gtmseg > > command: > > > > Computing colortable > > ERROR: cannot find match for subcortical segid 229 > > ERROR: mri_gtmseg -s qsm_04_year3 --usf 2 --o gtmseg.mgz --apas > > apas+head.mgz --no-subseg-wm --no-keep-cc --no-keep-hypo > > gtmseg existed with errors > > ans=1 > > > > Do you know what happened with this subject? What can I do to solve it? > > > > Thank you very much in advance. > > Marina. > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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