Can you send the full terminal output?

On 10/14/19 12:01 AM, Sims, Sara A (Campus) wrote:
>
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>
> Freesurfers,
>
> I am trying to use mri_mask using surface overlays. I made a label 
> into a volume and then into a surface with 1s inside the label and 0s 
> outside the label. I want to make a connectivity map surface overlay 
> with values only within my label overlay. However when I run it, it 
> creates a surface overlay with only zeros. There is definitely values 
> within the label surface overlay (I triple checked).
>
> Code I used:
>
> Mri_mask original_surface_overlay label_mask new_masked_output
>
> It doesn’t output any errors.
>
> Here is what it looks like in freeview:
>
> Original surface overlay (label is outlined in green)
>
> The label made into a surface overlay (same  as the one shown in green 
> above):
>
> But this is the output: all zeros even though there was data within 
> the mask.
>
> Help!
>
> *Sara A. Sims*
>
>
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