Can you send the full terminal output? On 10/14/19 12:01 AM, Sims, Sara A (Campus) wrote: > > External Email - Use Caution > > Freesurfers, > > I am trying to use mri_mask using surface overlays. I made a label > into a volume and then into a surface with 1s inside the label and 0s > outside the label. I want to make a connectivity map surface overlay > with values only within my label overlay. However when I run it, it > creates a surface overlay with only zeros. There is definitely values > within the label surface overlay (I triple checked). > > Code I used: > > Mri_mask original_surface_overlay label_mask new_masked_output > > It doesn’t output any errors. > > Here is what it looks like in freeview: > > Original surface overlay (label is outlined in green) > > The label made into a surface overlay (same as the one shown in green > above): > > But this is the output: all zeros even though there was data within > the mask. > > Help! > > *Sara A. Sims* > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
