yes, they are, thought I don't know why you include "psf6" in the output folder.

On 2/20/2020 3:36 PM, Kate Marvel wrote:

        External Email - Use Caution

Dear All,

I would like to perform no partial volume correction of PET  using PETSURFER.
The steps followed in doing this is shown below:

gtmseg --s Patient_1

mri_concat Patient_1_pet.nii.gz --mean --o Patient_1_pet_tac_vol_mean.nii.gz

mri_coreg --s Patient_1 --mov Patient_1_pet_tac_vol_mean.nii.gz --reg Patient_1_pet_registration.lta --threads 4

mri_gtmpvc --i Patient_1_pet.nii.gz --reg Patient_1_pet_registration.lta --no-tfe --psf 0 --seg gtmseg.mgz   --o Patient_1_gtmpvc.output.psf6

I would like to know whether these steps suffices for a no partial volume correction.

Thanks.
--
kate

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Reply via email to