it is ok to spec -surfreg, but is not necessary in this case
mris_preproc will change the name when you spec a target subject
(eventhough the says that the default is sphere.reg)
On 2/21/2020 6:20 AM, Marina Fernández wrote:
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Hi Doug,
Thank you for your replay.
I understood that if I did not specify "--surfreg
my_avg_subject.sphere.reg" mri_preproc was going to use the original
file (sphere.reg), because in the help of mri_preproc it mentions this:
--surfreg SurfReg : default is sphere.reg
With this in mind,do you think it would not be necessary to specify it
in mris_preproc?
What is the difference between sphere.reg and my_avg_subject.sphere.reg?
Best wishes,
Marina
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