External Email - Use Caution They are all in the output folder of the subject.
The noxfix files are surfaces (in <subject>/surf/), the mgz file is a volume (in <subject>/mri/). Tim > On February 25, 2020 at 4:24 AM Gabriel Tapia <gabr...@partage3d.fr> wrote: > > > External Email - Use Caution > > Hello Bruce thank you for your quick reply, > Where should I look to get all these files? > The idea to check them is to confirm that the MRI went wrong at some point, > right? > Thanks, > > Gabriel Tapia <https://gabrieltapia.fr/> > www.Partage3D.fr <http://partage3d.fr/> > +33 6 62 90 11 67 > > > Le mar. 25 févr. 2020 à 04:09, Bruce Fischl <fis...@nmr.mgh.harvard.edu> a > écrit : > > > Hi Gabriel, > > > > that is a huge defect and generally means something major has gone wrong. > > Look at the lh or rh.orig.nofix and the corresponding ?h.inflated.nofix > > over the wm.mgz file to see what is wrong (usually something like a big > > chunk of skull is left over and connected to the surface, sometimes > > through orbital fat in the eye sockets) > > > > If you can't sort it out let us know and we will help > > cheers > > Bruce > > > > On Tue, 25 Feb 2020, Gabriel Tapia > > wrote: > > > > > > > > External Email - Use Caution > > > > > > Hello dear Freesurfer developers, nice to e-meet you and thank you for > > > working on this open source software! > > > > > > I am trying to produce a 3D file of a brain. > > > The command I am trying to run is recon-all and here is the error I get: > > > CORRECTING DEFECT 57 (vertices=33394, convex hull=9966) > > > Excessive topologic defect encountered: could not allocate 140742253 > > > edges for retessellation > > > Cannot allocate memory > > > > > > The version I am using is: freesurfer-Linux-centos4-stable-pub-v5.3.0 > > > The platform is Red Hat 64-bit running in a Virtual box with 7835mb > > > allocated memory. > > > You will find the corresponding log file attached. > > > > > > Isn't it surprising that I don't have enough memory with 7835mb > > allocated? > > > Sorry, I am new to Freesurfer and there might be something I didn't get. > > > Thank you very much in advance for your help, > > > Regards, > > > > > > Gabriel Tapia > > > www.Partage3D.fr > > > +33 6 62 90 11 67 > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
