On 7/17/2020 10:25 AM, Al Qadi, Ameen wrote:
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Dear Freesurfer Developers,
I hope this email finds you all safe and well. I have two questions
regarding the new version of freesurfer:
* Is there a new CLUT associated with FS7? I tried to use the CLUT
labels to extract thalamic subnuclei ROIs, but got empty ROI files.
They should be in $FREESURFER/FreeSurferColorLUT.txt
How are you extracting?
* Given that Freesurfer version 7 contains segmentations not
previously generated in recon-all (i.e. hippocampal subfields), is
it possible to extract these ROIs using aparc+aseg images
generated using previous versions of Freesurfer? Or do we need to
repeat the cortical parcellations (i.e. rerun recon-all) using FS7?
You can run the hippocamal and thalamic segs on FS version 6 subjects.
I’d highly appreciate your time and feedback on this matter. Thank you.
Best,
Ameen
--
Ameen Al Qadi
MSBS Candidate
Icahn School Of Medicine at Mount Sinai '20
+1-646-500-1521
[email protected] <mailto:[email protected]>
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