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Hi Doug,
Yes that's the area. Thank you for your help!
Angel Hammond
Research Specialist
Center for Healthy Minds
University of Wisconsin-Madison
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve
<dgr...@mgh.harvard.edu>
Sent: Thursday, July 23, 2020 9:37 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Subcortical Structure Pial Line Exclusion
do you mean where the cursor is? That's in hippocampus or amygdala, so it is
fine that the pial surfaces cuts through them
On 7/21/2020 1:44 PM, Angel Hammond wrote:
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Hello Freesurfer Experts,
I think I may already know the answer to this, but just wanted to check in to
be sure. I know that in general when checking the recon for a subject for pial
and wm line correctness, that subcortical structure segmentation within those
lines is not that important to correct. I was looking at a subject that looks
to be be omitting subcortical structures from the pial line and persists for
many slices. Is this something that needs to be corrected with wm edits or is
this not to be worried about? I included some screenshots of the area.
Thanks!
Angel Hammond
Research Specialist
Center for Healthy Minds
University of Wisconsin-Madison
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